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    LOC4337100 anthocyanidin reductase ((2S)-flavan-3-ol-forming) [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337100, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4337100
    Gene description
    anthocyanidin reductase ((2S)-flavan-3-ol-forming)
    Locus tag
    OSNPB_040630800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 68.6), leaves after flowering (RPKM 34.1) and 5 other tissues See more
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    Genomic context

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    See LOC4337100 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (32593192..32595958)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (32085520..32088331)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene anthocyanidin reductase ((2S)-flavan-3-ol-forming) Neighboring gene uncharacterized LOC4337099 Neighboring gene anthocyanidin reductase ((2S)-flavan-3-ol-forming) Neighboring gene uncharacterized LOC136356241

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    anthocyanidin reductase ((2S)-flavan-3-ol-forming)
    Names
    Os04g0630800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      32593192..32595958
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781612.3 → XP_015637098.1  anthocyanidin reductase ((2S)-flavan-3-ol-forming)

      UniProtKB/TrEMBL
      A0A0P0WF57, B8ARW0, Q0J9U6, Q5JQX6
      Conserved Domains (2) summary
      cd08958
      Location:10 → 318
      FR_SDR_e; flavonoid reductase (FR), extended (e) SDRs
      PLN00198
      Location:1 → 342
      PLN00198; anthocyanidin reductase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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