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    LOC4348829 2-oxoadipate dioxygenase/decarboxylase, chloroplastic/amyloplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348829, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4348829
    Gene description
    2-oxoadipate dioxygenase/decarboxylase, chloroplastic/amyloplastic-like
    Locus tag
    OSNPB_100463800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in milk grains (RPKM 133.1), leaves after flowering (RPKM 88.5) and 6 other tissues See more
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    Genomic context

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    See LOC4348829 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (17778750..17782245, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (17112005..17115447, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4348827 Neighboring gene uncharacterized LOC112936559 Neighboring gene uncharacterized LOC136353559 Neighboring gene uncharacterized LOC112936634 Neighboring gene hypersensitive-induced reaction 1 protein Neighboring gene uncharacterized LOC4348832

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    2-oxoadipate dioxygenase/decarboxylase, chloroplastic/amyloplastic-like
    Names
    Os10g0463800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      17778750..17782245 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759489.2 → XP_015614975.1  2-oxoadipate dioxygenase/decarboxylase, chloroplastic/amyloplastic-like

      UniProtKB/Swiss-Prot
      B9G651, Q0IX62, Q337M4, Q8H916
      UniProtKB/TrEMBL
      B8BHC3
      Conserved Domains (1) summary
      cd16350
      Location:70 → 347
      VOC_like; uncharacterized subfamily of the vicinal oxygen chelate (VOC) family
    Nucleotide Protein
    Heading Accession and Version

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