LOC4329229 cyclin-T1-2-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4329229
Gene description: cyclin-T1-2-like
Locus tag: OSNPB_020438200
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: CYCT1_2; CycT1;2; OsJ_06547; OJ1570_H12.4-1; OJ1570_H12.4-2
Expression: Ubiquitous expression in roots after flowering (RPKM 15.4), leaves after flowering (RPKM 14.0) and 6 other tissues See more
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Genomic context

Location:: chromosome: 2

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	2	NC_089036.1 (14468519..14475426)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	2	NC_029257.1 (14011189..14018123)

Chromosome 2 - NC_089036.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables cyclin-dependent protein serine/threonine kinase activator activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in positive regulation of DNA-templated transcription, elongation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of cyclin/CDK positive transcription elongation factor complex	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: cyclin-T1-2

Names: LOC_Os02g24190; cyclin K-like; cyclin T2-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001416587.1 → NP_001403516.1 cyclin-T1-2

Status: VALIDATED

Source sequence(s)

AK102728, CB678578, CF312827, CI556976, CI617756, CI773216

UniProtKB/Swiss-Prot

B7F0D1, Q6Z7H3, Q6Z7H4

UniProtKB/TrEMBL

B8AH65
NM_001416588.1 → NP_001403517.1 cyclin-T1-2

Status: VALIDATED

Source sequence(s)

AK102728, CB678578, CF312827, CI533268, CI556976, CI617756, CI750864, CI773011

UniProtKB/Swiss-Prot

B7F0D1, Q6Z7H3, Q6Z7H4

UniProtKB/TrEMBL

B8AH65

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089036.1 Reference ASM3414082v1 Primary Assembly

Range

14468519..14475426

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_066307007.1 → XP_066163104.1 cyclin-T1-2 isoform X2
XM_026023449.2 → XP_025879234.1 cyclin-T1-2 isoform X1

UniProtKB/Swiss-Prot

B7F0D1, Q6Z7H3, Q6Z7H4

UniProtKB/TrEMBL

B8AH65

Conserved Domains (1) summary

cl40454
Location:34 → 157

CYCLIN_SF; Cyclin box fold superfamily
XM_026023451.2 → XP_025879236.1 cyclin-T1-2 isoform X2

UniProtKB/TrEMBL

B8AH65

Conserved Domains (1) summary

cl28538
Location:2 → 160

CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]