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    LOC4333613 3-isopropylmalate dehydrogenase 2, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333613, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4333613
    Gene description
    3-isopropylmalate dehydrogenase 2, chloroplastic
    Locus tag
    OSNPB_030655700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 48.3), leaves before flowering (RPKM 39.2) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (26453102..26457464)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (25586202..25590665)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein VAPYRIN Neighboring gene protein FAR1-RELATED SEQUENCE 5 Neighboring gene uncharacterized LOC9270178 Neighboring gene uncharacterized LOC112938255

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3-isopropylmalate dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-leucine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    3-isopropylmalate dehydrogenase 2, chloroplastic
    Names
    Os03g0655700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      26453102..26457464
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777770.3 → XP_015633256.1  3-isopropylmalate dehydrogenase 2, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0W1E6, Q10FT9, Q7Y096
      Conserved Domains (1) summary
      PRK00772
      Location:43 → 400
      PRK00772; 3-isopropylmalate dehydrogenase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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