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    LOC4338665 protein N-terminal glutamine amidohydrolase-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338665, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4338665
    Gene description
    protein N-terminal glutamine amidohydrolase-like
    Locus tag
    OSNPB_050387900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_18401
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    Genomic context

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    See LOC4338665 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (18870498..18873566, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (18769008..18772151, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase-like protein At3g51990 Neighboring gene N-alpha-acetyltransferase 40 Neighboring gene putative NAD kinase 3 Neighboring gene large ribosomal subunit protein uL1c

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein-N-terminal asparagine amidohydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein-N-terminal glutamine amidohydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein N-terminal glutamine amidohydrolase
    Names
    LOC_Os05g32190
    N-terminal Gln amidase
    Nt(Q)-amidase
    OSJNBa0073E05.15
    Protein NH2-terminal glutamine deamidase
    NP_001410847.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423918.1 → NP_001410847.1  protein N-terminal glutamine amidohydrolase

      Status: VALIDATED

      Source sequence(s)
      AK062285
      UniProtKB/Swiss-Prot
      A0A0P0WLT6, B9FI21, Q60E61

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      18870498..18873566 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q60E61.1 GenPept UniProtKB/Swiss-Prot:Q60E61

    Gene LinkOut

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