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    LOC107278554 uncharacterized LOC107278554 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 107278554, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC107278554
    Gene description
    uncharacterized LOC107278554
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 10.5), flower buds (RPKM 9.2) and 6 other tissues See more
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    Genomic context

    See LOC107278554 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (3890562..3893620)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (3830161..3833366)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerases II, IV and V subunit 11 Neighboring gene pentatricopeptide repeat-containing protein At5g03800 Neighboring gene folate-biopterin transporter 1, chloroplastic Neighboring gene uncharacterized LOC4342521

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    uncharacterized protein LOC107278554
    Names
    Os07g0172900
    P0496D04.34-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      3890562..3893620
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792001.3XP_015647487.1  uncharacterized protein LOC107278554

      UniProtKB/TrEMBL
      A0A0P0X2Y9, A2YIL9, A3BH14, Q6ZA56