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    LOC4345995 beta-glucosidase 27-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345995, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4345995
    Gene description
    beta-glucosidase 27-like
    Locus tag
    OSNPB_080509200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    BGLU27; Os8bglu27
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    Genomic context

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    See LOC4345995 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (25396472..25400828, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (25250327..25254665, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene lipoxygenase 7, chloroplastic-like Neighboring gene probable lipoxygenase 8, chloroplastic Neighboring gene beta-glucosidase 28-like Neighboring gene G patch domain-containing protein 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-glucosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beta-glucosidase 27
    Names
    B1168A08.29-1
    B1168A08.29-2
    LOC_Os08g39860
    OSJNBa0016N23.104-1
    OSJNBa0016N23.104-2
    putative beta-glucosidase isozyme 2
    NP_001390583.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403654.1 → NP_001390583.1  beta-glucosidase 27 precursor

      Status: VALIDATED

      Source sequence(s)
      AK067001, CB638726, CB656203, CI522827, CI660203
      UniProtKB/Swiss-Prot
      A0A0P0XIN7, Q7EXZ5, Q84YK7
      UniProtKB/TrEMBL
      B8BCB0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      25396472..25400828 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84YK7.1 GenPept UniProtKB/Swiss-Prot:Q84YK7

    Gene LinkOut

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