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    LOC4327858 iron-sulfur cluster assembly protein 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327858, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4327858
    Gene description
    iron-sulfur cluster assembly protein 1-like
    Locus tag
    OSNPB_010662600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 200.1), leaves after flowering (RPKM 193.1) and 6 other tissues See more
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    Genomic context

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    See LOC4327858 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (27630081..27632990, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (27047380..27050481, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107279900 Neighboring gene 50S ribosomal protein L12, chloroplastic-like Neighboring gene 1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal Neighboring gene GATA transcription factor 20

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 2 iron, 2 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ferrous iron binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular iron ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in iron-sulfur cluster assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrial matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    iron-sulfur cluster assembly protein 1-like
    Names
    Os01g0662600
    P0671D01.28
    iron-sulfur cluster assembly enzyme ISCU
    iron-sulfur cluster assembly scaffold protein IscU
    putative iron-sulfur cofactor synthesis protein iscU

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      27630081..27632990 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766154.3 → XP_015621640.1  iron-sulfur cluster assembly protein 1-like

      UniProtKB/Swiss-Prot
      Q8LR34
      UniProtKB/TrEMBL
      A0A7U0IYQ6
      Conserved Domains (1) summary
      PRK11325
      Location:33 → 159
      PRK11325; scaffold protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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