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    LOC4344444 F-box protein At5g39450 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344444, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4344444
    Gene description
    F-box protein At5g39450
    Locus tag
    OSNPB_080105100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1300_E01.9
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 11.0), roots after flowering (RPKM 10.2) and 6 other tissues See more
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    Genomic context

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    See LOC4344444 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (282896..286237, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (278006..281608, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene UDP-galactose transporter 1 Neighboring gene PHD finger protein EHD3-like Neighboring gene indole-2-monooxygenase Neighboring gene indole-2-monooxygenase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box protein At5g39450
    Names
    F-box domain-containing protein
    F-box protein family-like
    Os08g0105100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403313.1 → NP_001390242.1  F-box protein At5g39450

      Status: VALIDATED

      Source sequence(s)
      AK069415, C97049, CI257335, CI626807
      UniProtKB/TrEMBL
      A0A0P0XAU0, A0A411P2N4, B9FYN6, Q6ZJM8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      282896..286237 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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