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    LOC4345149 DNA replication complex GINS protein PSF3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345149, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4345149
    Gene description
    DNA replication complex GINS protein PSF3
    Locus tag
    OSNPB_080274700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1014_B05.21
    Expression
    Ubiquitous expression in mature seeds (RPKM 29.3), flower buds (RPKM 26.9) and 6 other tissues See more
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    Genomic context

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    See LOC4345149 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (10624589..10635260)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (10565392..10578010)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351475 Neighboring gene uncharacterized LOC112939881 Neighboring gene putative receptor-like protein kinase At1g80870 Neighboring gene transmembrane 9 superfamily member 8-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mitotic DNA replication initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of GINS complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA replication complex GINS protein PSF3
    Names
    Os08g0274700
    probable DNA replication complex GINS protein PSF3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      10624589..10635260
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795301.3 → XP_015650787.1  DNA replication complex GINS protein PSF3

      UniProtKB/TrEMBL
      A0A0P0XED1, A0A8J8XMN6, A3BRF0, Q0J6S2
      Conserved Domains (2) summary
      cd11713
      Location:63 → 169
      GINS_A_psf3; Alpha-helical domain of GINS complex protein Psf3 (partner of Sld5 3)
      cl41778
      Location:4 → 68
      GINS_B; beta-strand (B) domain of GINS complex proteins: Sld5, Psf1, Psf2, Psf3, Gins51 and Gins23

    2. XM_066303468.1 → XP_066159565.1  DNA replication complex GINS protein PSF3

      UniProtKB/TrEMBL
      A0A0P0XED1, A0A8J8XMN6, A3BRF0, Q0J6S2
    Nucleotide Protein
    Heading Accession and Version

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