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    LOC4349708 protein ZINC INDUCED FACILITATOR-LIKE 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349708, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4349708
    Gene description
    protein ZINC INDUCED FACILITATOR-LIKE 1
    Locus tag
    OSNPB_110135900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 11.1), flower buds (RPKM 7.3) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 11
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (1702683..1712961, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (1657865..1672051, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene protein ZINC INDUCED FACILITATOR-LIKE 1 Neighboring gene large ribosomal subunit protein uL10-like Neighboring gene uncharacterized LOC136353921 Neighboring gene WAT1-related protein At5g64700-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable peptide/nitrate transporter At3g43790; protein ZINC INDUCED FACILITATOR-LIKE 1
    Names
    Os11g0135900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      1702683..1712961 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761871.3 → XP_015617357.1  probable peptide/nitrate transporter At3g43790 isoform X3

      UniProtKB/TrEMBL
      A0A0P0Y6N2
      Conserved Domains (2) summary
      cd06174
      Location:56 → 458
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      pfam07690
      Location:59 → 450
      MFS_1; Major Facilitator Superfamily

    2. XM_015761870.3 → XP_015617356.1  protein ZINC INDUCED FACILITATOR-LIKE 1 isoform X1

      UniProtKB/TrEMBL
      A0A0P0Y6N2, H2KVX5
      Conserved Domains (1) summary
      cd17330
      Location:59 → 458
      MFS_SLC46_TetA_like; Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters

    3. XM_066305249.1 → XP_066161346.1  protein ZINC INDUCED FACILITATOR-LIKE 1 isoform X4

      UniProtKB/TrEMBL
      B8BLX7

    4. XM_015761874.3 → XP_015617360.1  protein ZINC INDUCED FACILITATOR-LIKE 1 isoform X2

      UniProtKB/TrEMBL
      A0A8J8XWF0, B8BIY2, B8BLX7, B9G9A0, Q0IUT5, Q2RAV7
      Conserved Domains (2) summary
      cd06174
      Location:42 → 444
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      pfam07690
      Location:45 → 436
      MFS_1; Major Facilitator Superfamily
    Nucleotide Protein
    Heading Accession and Version

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