U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4349371 uncharacterized LOC4349371 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349371, updated on 12-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4349371
    Gene description
    uncharacterized LOC4349371
    Locus tag
    OSNPB_100559600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 45.0), roots after flowering (RPKM 42.1) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4349371 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (22716120..22728172, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (22024197..22036258, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene 2-oxoglutarate-dependent dioxygenase 11-like Neighboring gene 2-oxoglutarate-dependent dioxygenase 11-like Neighboring gene F-box protein At5g07610-like Neighboring gene 2-oxoglutarate-dependent dioxygenase 11-like Neighboring gene uncharacterized LOC4349372 Neighboring gene uncharacterized LOC136353613 Neighboring gene uncharacterized LOC4349373

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC4349371
    Names
    Os10g0559600
    Os10g0559700

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      22716120..22728172 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066304637.1 → XP_066160734.1  uncharacterized protein LOC4349371 isoform X4

    2. XM_015758620.3 → XP_015614106.1  uncharacterized protein LOC4349371 isoform X3

      UniProtKB/TrEMBL
      A0A5S6R8I3, Q108Y7, Q7XC74, Q8SB96
      Conserved Domains (2) summary
      smart00743
      Location:1642 → 1700
      Agenet; Tudor-like domain present in plant sequences
      pfam05641
      Location:1557 → 1621
      Agenet; Agenet domain

    3. XM_015758619.3 → XP_015614105.1  uncharacterized protein LOC4349371 isoform X2

      UniProtKB/TrEMBL
      Q108Y7
      Conserved Domains (2) summary
      smart00743
      Location:1646 → 1703
      Agenet; Tudor-like domain present in plant sequences
      pfam05641
      Location:1561 → 1625
      Agenet; Agenet domain

    4. XM_015758618.3 → XP_015614104.1  uncharacterized protein LOC4349371 isoform X1

      UniProtKB/TrEMBL
      Q108Y7
      Conserved Domains (2) summary
      smart00743
      Location:1646 → 1704
      Agenet; Tudor-like domain present in plant sequences
      pfam05641
      Location:1561 → 1625
      Agenet; Agenet domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials