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    LOC4349988 lipase-like PAD4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349988, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4349988
    Gene description
    lipase-like PAD4
    Locus tag
    OSNPB_110195500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4349988 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (4840371..4844641)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (4784987..4789380)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene protein translocase subunit SECA2, chloroplastic Neighboring gene EID1-like F-box protein 3 Neighboring gene amino acid permease 3 Neighboring gene uncharacterized LOC136354082

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rice OsPAD4 functions differently from Arabidopsis AtPAD4 in host-pathogen interactions. Ke Y, et al. Plant J, 2014 May. PMID 24617729
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lipase-like PAD4
    Names
    Os11g0195500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      4840371..4844641
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762065.3 → XP_015617551.1  lipase-like PAD4 isoform X1

      UniProtKB/TrEMBL
      A3C9G2, Q2R9E7, Q53LH1
      Conserved Domains (2) summary
      pfam18117
      Location:435 → 659
      EDS1_EP; Enhanced disease susceptibility 1 protein EP domain
      cl21494
      Location:125 → 227
      Abhydrolase; alpha/beta hydrolases

    2. XM_066305245.1 → XP_066161342.1  lipase-like PAD4 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases
    Research Materials