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    LOC4351664 probable L-ascorbate peroxidase 5, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351664, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4351664
    Gene description
    probable L-ascorbate peroxidase 5, chloroplastic
    Locus tag
    OSNPB_120178200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    APX5; OsAPx5; OsAPx05
    Expression
    Ubiquitous expression in flower buds (RPKM 14.5), flowers (RPKM 14.2) and 6 other tissues See more
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    Genomic context

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    See LOC4351664 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (3989695..3993185, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (3960506..3964017, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene aldehyde dehydrogenase family 3 member H1 Neighboring gene probable L-ascorbate peroxidase 6, chloroplastic/mitochondrial Neighboring gene probable methyltransferase PMT26 Neighboring gene bidirectional sugar transporter SWEET7c

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in hydrogen peroxide catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to reactive oxygen species IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable L-ascorbate peroxidase 5, chloroplastic
    Names
    LOC_Os12g07830
    NP_001410282.1
    XP_015618475.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423353.1 → NP_001410282.1  probable L-ascorbate peroxidase 5, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK073910, AP014968, CB685742
      UniProtKB/Swiss-Prot
      A0A0P0Y7Q3, P0C0L0, Q2QWY1
      UniProtKB/TrEMBL
      B8BNF9

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      3989695..3993185 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762989.3 → XP_015618475.1  probable L-ascorbate peroxidase 5, chloroplastic isoform X1

      UniProtKB/TrEMBL
      B8BNF9
      Conserved Domains (1) summary
      cd00691
      Location:49 → 319
      ascorbate_peroxidase; Ascorbate peroxidases and cytochrome C peroxidases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0C0L0.1 GenPept UniProtKB/Swiss-Prot:P0C0L0

    Gene LinkOut

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