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    LOC4342138 protein argonaute 1D-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342138, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4342138
    Gene description
    protein argonaute 1D-like
    Locus tag
    OSNPB_060729300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    AGO1D; OsAGO1d
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    Genomic context

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    See LOC4342138 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (31939753..31948156)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (31069081..31077381)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene callose synthase 3 Neighboring gene phytoene synthase 2, chloroplastic Neighboring gene snakin-2 Neighboring gene uncharacterized LOC4342140 Neighboring gene photosystem II stability/assembly factor HCF136, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulatory ncRNA-mediated post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein argonaute 1D
    Names
    LOC_Os06g51310
    OSJNBa0069C14.10-1
    OSJNBa0069C14.10-2
    putative AGO1 homologous protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402967.1 → NP_001389896.1  protein argonaute 1D

      Status: VALIDATED

      Source sequence(s)
      AK111500, AK122176, CI079194, CI396034
      UniProtKB/Swiss-Prot
      A0A0P0X188, Q5Z5B2
      UniProtKB/TrEMBL
      B9FR04

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      31939753..31948156
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311193.1 → XP_066167290.1  protein argonaute 1D isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0X188, Q5Z5B2
      UniProtKB/TrEMBL
      B9FR04
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5Z5B2.1 GenPept UniProtKB/Swiss-Prot:Q5Z5B2

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials