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    LOC4350745 prefoldin subunit 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350745, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4350745
    Gene description
    prefoldin subunit 2
    Locus tag
    OSNPB_110568500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4350745 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (23120382..23122562)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (21185498..21187780)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene receptor-like protein EIX1 Neighboring gene uncharacterized LOC4350744 Neighboring gene uncharacterized LOC4350746 Neighboring gene uncharacterized LOC107277535 Neighboring gene uncharacterized LOC9267082

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein folding chaperone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of prefoldin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    prefoldin subunit 2
    Names
    Os11g0568500
    probable prefoldin subunit 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      23120382..23122562
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015760030.3 → XP_015615516.1  prefoldin subunit 2

      UniProtKB/TrEMBL
      Q0IS38, Q2R2E8
      Conserved Domains (1) summary
      pfam01920
      Location:20 → 120
      Prefoldin_2; Prefoldin subunit

    2. XM_015760029.3 → XP_015615515.1  prefoldin subunit 2

      UniProtKB/TrEMBL
      Q0IS38, Q2R2E8
      Conserved Domains (1) summary
      pfam01920
      Location:20 → 120
      Prefoldin_2; Prefoldin subunit
    Nucleotide Protein
    Heading Accession and Version

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