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    LOC4342135 protein REVEILLE 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342135, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4342135
    Gene description
    protein REVEILLE 1
    Locus tag
    OSNPB_060728700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in mature seeds (RPKM 11.1), roots after flowering (RPKM 4.1) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (31896591..31899616, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (31025939..31029126, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4342133 Neighboring gene uncharacterized calcium-binding protein C800.10c Neighboring gene callose synthase 3 Neighboring gene phytoene synthase 2, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein REVEILLE 1
    Names
    OSJNBa0069C14.1
    Os06g0728700
    P0017G10.36
    myb transcription factor
    putative MYB transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      31896591..31899616 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788899.3 → XP_015644385.1  protein REVEILLE 1 isoform X1

      UniProtKB/TrEMBL
      B5AEI9, Q0D9B4, Q5Z5B9, Q5Z7N0
      Conserved Domains (2) summary
      smart00717
      Location:65 → 112
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cl21498
      Location:63 → 113
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    2. XM_066311515.1 → XP_066167612.1  protein REVEILLE 1 isoform X2

      UniProtKB/TrEMBL
      B8B2Y4
    Nucleotide Protein
    Heading Accession and Version

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