U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4330961 diacylglycerol kinase 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330961, updated on 18-Sep-2024

    Summary

    Gene symbol
    LOC4330961
    Gene description
    diacylglycerol kinase 7
    Locus tag
    OSNPB_020787800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 78.5), leaves before flowering (RPKM 59.4) and 5 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LOC4330961 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (33970302..33980125, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (33474279..33484115, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase 5 Neighboring gene E3 ubiquitin-protein ligase At1g63170 Neighboring gene glutamate receptor 2.9 Neighboring gene uncharacterized LOC112937883 Neighboring gene uncharacterized LOC4330962

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    diacylglycerol kinase 7
    Names
    OSJNBa0054K20.17
    Os02g0787800
    diacylglycerol kinase-like

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      33970302..33980125 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026022942.2XP_025878727.1  diacylglycerol kinase 7

      UniProtKB/TrEMBL
      A0A0P0VQI3, A3AC42, Q6K4P5
      Conserved Domains (2) summary
      pfam00609
      Location:282459
      DAGK_acc; Diacylglycerol kinase accessory domain
      pfam00781
      Location:89224
      DAGK_cat; Diacylglycerol kinase catalytic domain
    2. XM_015770749.3XP_015626235.1  diacylglycerol kinase 7

      UniProtKB/TrEMBL
      A0A0P0VQI3, A3AC42, Q6K4P5
      Conserved Domains (2) summary
      pfam00609
      Location:282459
      DAGK_acc; Diacylglycerol kinase accessory domain
      pfam00781
      Location:89224
      DAGK_cat; Diacylglycerol kinase catalytic domain
    3. XM_015770750.3XP_015626236.1  diacylglycerol kinase 7

      UniProtKB/TrEMBL
      A0A0P0VQI3, A3AC42, Q6K4P5
      Conserved Domains (2) summary
      pfam00609
      Location:282459
      DAGK_acc; Diacylglycerol kinase accessory domain
      pfam00781
      Location:89224
      DAGK_cat; Diacylglycerol kinase catalytic domain