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    LOC4347584 BAG-associated GRAM protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347584, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347584
    Gene description
    BAG-associated GRAM protein 1
    Locus tag
    OSNPB_090516900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 24.9), leaves after flowering (RPKM 24.4) and 6 other tissues See more
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    Genomic context

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    See LOC4347584 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (24558598..24565662, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (20147201..20154264, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4347582 Neighboring gene uncharacterized LOC4347583 Neighboring gene uncharacterized LOC4347585 Neighboring gene disease resistance protein Pik-2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    BAG-associated GRAM protein 1
    Names
    C2 domain-containing protein-like
    OSJNBb0034B12.20
    Os09g0516900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      24558598..24565662 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757001.2 → XP_015612487.1  BAG-associated GRAM protein 1

      UniProtKB/TrEMBL
      A0A0P0XQ46, B8BDJ5, Q69MT7
      Conserved Domains (3) summary
      cd00030
      Location:91 → 187
      C2; C2 domain
      pfam16016
      Location:414 → 560
      DUF4782; Domain of unknown function (DUF4782)
      cl17171
      Location:249 → 357
      PH-like; Pleckstrin homology-like domain
    Nucleotide Protein
    Heading Accession and Version

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