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    LOC4324609 ABC transporter I family member 10 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324609, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4324609
    Gene description
    ABC transporter I family member 10
    Locus tag
    OSNPB_010770500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 9.3), flower buds (RPKM 6.6) and 6 other tissues See more
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    Genomic context

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    See LOC4324609 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (33119308..33122646, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (32513595..32517040, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene tyrosine decarboxylase-like Neighboring gene F-box protein At4g18380 Neighboring gene copper transporter 1-like Neighboring gene copper transporter 3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast envelope IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ABC transporter I family member 10
    Names
    ABC transporter I family member 10, chloroplastic
    Os01g0770500
    P0665A11.18
    putative cobalt transport ATP-binding protein cbiO

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      33119308..33122646 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066304322.1 → XP_066160419.1  ABC transporter I family member 10 isoform X2

      UniProtKB/TrEMBL
      B8AA53

    2. XM_015774459.3 → XP_015629945.1  ABC transporter I family member 10 isoform X1

      UniProtKB/TrEMBL
      A0A0P0V8N1, B8AA53, Q5ZD09
      Conserved Domains (2) summary
      TIGR01166
      Location:63 → 221
      cbiO; cobalt transport protein ATP-binding subunit
      cd03225
      Location:62 → 246
      ABC_cobalt_CbiO_domain1; First domain of the ATP-binding cassette component of cobalt transport system
    Nucleotide Protein
    Heading Accession and Version

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