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    LOC4331680 DEAD-box ATP-dependent RNA helicase 38-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331680, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4331680
    Gene description
    DEAD-box ATP-dependent RNA helicase 38-like
    Locus tag
    OSNPB_030158200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1134F05.6
    Expression
    Ubiquitous expression in mature seeds (RPKM 46.4), flower buds (RPKM 25.4) and 6 other tissues See more
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    Genomic context

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    See LOC4331680 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (3125170..3129589)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (3115969..3120378)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene phosphoserine aminotransferase 1, chloroplastic Neighboring gene GDSL esterase/lipase At2g04570-like Neighboring gene photosynthetic NDH subunit of subcomplex B 2, chloroplastic Neighboring gene uncharacterized LOC107280462 Neighboring gene transfer RNA leucine (anticodon CAA)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in poly(A)+ mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic stress granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dEAD-box ATP-dependent RNA helicase 38
    Names
    DEAD-box ATP-dependent RNA helicase 38
    LOC_Os03g06220
    NP_001404153.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417224.1 → NP_001404153.1  dEAD-box ATP-dependent RNA helicase 38

      Status: VALIDATED

      Source sequence(s)
      AK242248, AP014959, CI072054, CI138144, CI582035, CI677093
      UniProtKB/Swiss-Prot
      A0A0P0VTA7, Q10RI7, Q8H8C3
      UniProtKB/TrEMBL
      B8ANU5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      3125170..3129589
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10RI7.1 GenPept UniProtKB/Swiss-Prot:Q10RI7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials