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    LOC4337447 oxalate--CoA ligase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337447, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4337447
    Gene description
    oxalate--CoA ligase
    Locus tag
    OSNPB_040683700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 365.3), roots after flowering (RPKM 84.7) and 4 other tissues See more
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    Genomic context

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    See LOC4337447 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (35428627..35430526, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (34908492..34910656, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene tRNA-specific adenosine deaminase TAD1 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g63430 Neighboring gene FT-interacting protein 3 Neighboring gene probable phospholipid hydroperoxide glutathione peroxidase Neighboring gene AT-hook motif nuclear-localized protein 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables medium-chain fatty acid-CoA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    oxalate--CoA ligase
    Names
    Os04g0683700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      35428627..35430526 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015779877.3 → XP_015635363.1  oxalate--CoA ligase

      UniProtKB/TrEMBL
      A0A0P0WGG6, A2XZ41, Q259Q6, Q7XPV4
      Conserved Domains (1) summary
      cd05926
      Location:18 → 507
      FACL_fum10p_like; Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis
    Nucleotide Protein
    Heading Accession and Version

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