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    LOC4342350 succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342350, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4342350
    Gene description
    succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like
    Locus tag
    OSNPB_070134800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    FP; SDH1
    Expression
    Ubiquitous expression in flowers (RPKM 106.2), flower buds (RPKM 96.4) and 6 other tissues See more
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    Genomic context

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    See LOC4342350 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (1871765..1877707, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (1860674..1866551, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4342347 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At2g16250 Neighboring gene transcription termination factor MTERF2, chloroplastic Neighboring gene uncharacterized LOC9268685 Neighboring gene uncharacterized LOC4342352

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables electron transfer activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables flavin adenine dinucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables succinate dehydrogenase (quinone) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial electron transport, succinate to ubiquinone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tricarboxylic acid cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial
    Names
    Flavoprotein subunit of complex II
    LOC_Os07g04240
    P0507H12.27
    putative succinate dehydrogenase flavoprotein alpha subunit
    NP_001389922.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402993.1 → NP_001389922.1  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial

      Status: VALIDATED

      Source sequence(s)
      AK062102, AK099460, CB679800, CI568408, CI588620
      UniProtKB/Swiss-Prot
      A0A0P0X2R9, Q0D8R4, Q6ZDY8
      UniProtKB/TrEMBL
      B8B729, B9FVD6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      1871765..1877707 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6ZDY8.1 GenPept UniProtKB/Swiss-Prot:Q6ZDY8

    Gene LinkOut

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