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    LOC4336000 histone H3.3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336000, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4336000
    Gene description
    histone H3.3
    Locus tag
    OSNPB_040450800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 208.1), flower buds (RPKM 137.1) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (22954093..22956834)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22461246..22464059)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4335998 Neighboring gene FK506-binding protein 2 Neighboring gene arabinogalactan protein 1 Neighboring gene WEB family protein At3g02930, chloroplastic Neighboring gene uncharacterized LOC4336003 Neighboring gene 7-deoxyloganetin glucosyltransferase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Salt induces expression of RH3.2A, encoding an H3.2-type histone H3 protein in rice (Oryza sativa L.). Qiu SP, et al. Yi Chuan Xue Bao, 2006 Sep. PMID 16980130
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone H3.3
    Names
    Os04g0450800
    putative histone H3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      22954093..22956834
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309603.1 → XP_066165700.1  histone H3.3

      UniProtKB/Swiss-Prot
      A2XHJ3, Q0JCT1, Q71UF0, Q7F8L1, Q8SA80
      UniProtKB/TrEMBL
      A0A8J8XDW2, A3AUC6, B8AUE9, B9F8T4, D6PYM8, D9J2J6

    2. XM_066309602.1 → XP_066165699.1  histone H3.3

      UniProtKB/Swiss-Prot
      A2XHJ3, Q0JCT1, Q71UF0, Q7F8L1, Q8SA80
      UniProtKB/TrEMBL
      A0A8J8XDW2, A3AUC6, B8AUE9, B9F8T4, D6PYM8, D9J2J6
    Nucleotide Protein
    Heading Accession and Version

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