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    LOC4330712 ATPase GET3B [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330712, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330712
    Gene description
    ATPase GET3B
    Locus tag
    OSNPB_020745000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1118_G04.14; OJ1734_E02.41
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 37.6), roots after flowering (RPKM 23.9) and 6 other tissues See more
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    Genomic context

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    See LOC4330712 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (31747741..31751171, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (31252576..31256023, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene geranylgeranyl diphosphate reductase, chloroplastic-like Neighboring gene protein RKD1 Neighboring gene aquaporin NIP2-1-like Neighboring gene uncharacterized LOC9268747

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in post-translational protein targeting to endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of GET complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATPase GET3B
    Names
    ATPase ARSA1
    ATPase GET3
    Os02g0745000
    putative ATPase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      31747741..31751171 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026022898.2 → XP_025878683.1  ATPase GET3B isoform X2

      UniProtKB/TrEMBL
      B8AIG1, B9F2Z5
      Conserved Domains (1) summary
      cl21455
      Location:70 → 388
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    2. XM_015767495.3 → XP_015622981.1  ATPase GET3B isoform X1

      UniProtKB/TrEMBL
      B8AIG1, B9F2Z5
      Conserved Domains (1) summary
      cd02035
      Location:70 → 388
      ArsA; Arsenical pump-driving ATPase ArsA

    3. XM_066307831.1 → XP_066163928.1  ATPase GET3B isoform X3

    RNA

    1. XR_001542818.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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    Research Materials