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    LOC4343589 uncharacterized LOC4343589 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343589, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343589
    Gene description
    uncharacterized LOC4343589
    Locus tag
    OSNPB_070559400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 7.7), flower buds (RPKM 4.3) and 4 other tissues See more
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    Genomic context

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    See LOC4343589 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (22575801..22577656, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (22346374..22348445, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene vesicle-associated protein 4-1 Neighboring gene uncharacterized LOC136357171 Neighboring gene sugar transport protein MST6-like Neighboring gene transfer RNA glycine (anticodon UCC)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4343589
    Names
    Os07g0559400
    P0567H04.23
    membrane lipoprotein lipid attachment site-containing protein -like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      22575801..22577656 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789653.3 → XP_015645139.1  uncharacterized protein LOC4343589

      UniProtKB/TrEMBL
      A0A0P0X7H8, A0A5S6RC06, A2YML6, Q0D5H9, Q6Z402
      Conserved Domains (1) summary
      pfam06764
      Location:35 → 255
      DUF1223; Protein of unknown function (DUF1223)
    Nucleotide Protein
    Heading Accession and Version

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