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    LOC4335844 stress protein DDR48 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335844, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4335844
    Gene description
    stress protein DDR48
    Locus tag
    OSNPB_040423400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 6.8), leaves before flowering (RPKM 6.2) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (21339561..21344376, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (20934860..20948881, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene putative UPF0496 protein 2 Neighboring gene uncharacterized LOC136355959 Neighboring gene protein SET DOMAIN GROUP 41 Neighboring gene protein PHLOEM UNLOADING MODULATOR Neighboring gene peroxidase 72

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    stress protein DDR48
    Names
    Os04g0423400
    Os04g0423600
    filaggrin-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      21339561..21344376 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309273.1 → XP_066165370.1  stress protein DDR48 isoform X1

      UniProtKB/TrEMBL
      Q01L88

    2. XM_066309279.1 → XP_066165376.1  stress protein DDR48 isoform X3

      UniProtKB/TrEMBL
      B8ATR4, B9FF68

    3. XM_066309277.1 → XP_066165374.1  stress protein DDR48 isoform X3

      UniProtKB/TrEMBL
      B8ATR4, B9FF68

    4. XM_066309280.1 → XP_066165377.1  stress protein DDR48 isoform X3

      UniProtKB/TrEMBL
      B8ATR4, B9FF68

    5. XM_066309274.1 → XP_066165371.1  stress protein DDR48 isoform X1

      UniProtKB/TrEMBL
      Q01L88

    6. XM_066309276.1 → XP_066165373.1  stress protein DDR48 isoform X2

    7. XM_066309275.1 → XP_066165372.1  stress protein DDR48 isoform X2

    8. XM_066309278.1 → XP_066165375.1  stress protein DDR48 isoform X3

      UniProtKB/TrEMBL
      B8ATR4, B9FF68

    9. XM_066309281.1 → XP_066165378.1  stress protein DDR48 isoform X3

      UniProtKB/TrEMBL
      B8ATR4, B9FF68
    Nucleotide Protein
    Heading Accession and Version

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