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    LOC4344556 L-type lectin-domain containing receptor kinase IX.1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344556, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344556
    Gene description
    L-type lectin-domain containing receptor kinase IX.1
    Locus tag
    OSNPB_080124100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4344556 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (1324695..1326697, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (1313269..1315292, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene L-type lectin-domain containing receptor kinase IX.1-like Neighboring gene L-type lectin-domain containing receptor kinase IX.1 Neighboring gene L-type lectin-domain containing receptor kinase IX.1 Neighboring gene L-type lectin-domain containing receptor kinase IX.1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein tyrosine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    L-type lectin-domain containing receptor kinase IX.1; L-type lectin-domain containing receptor kinase IX.2
    Names
    OSJNBa0073J19.42
    Os08g0124100
    putative vegetative lectin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      1324695..1326697 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794311.3 → XP_015649797.1  L-type lectin-domain containing receptor kinase IX.1 isoform X3

      Conserved Domains (2) summary
      pfam00139
      Location:32 → 286
      Lectin_legB; Legume lectin domain
      cl21453
      Location:377 → 469
      PKc_like; Protein Kinases, catalytic domain

    2. XM_066303367.1 → XP_066159464.1  L-type lectin-domain containing receptor kinase IX.2 isoform X1

    3. XM_015794310.3 → XP_015649796.1  L-type lectin-domain containing receptor kinase IX.2 isoform X2

      UniProtKB/TrEMBL
      B9FYV2, Q0J8B1, Q6YX20
      Conserved Domains (2) summary
      pfam00139
      Location:35 → 287
      Lectin_legB; Legume lectin domain
      cl21453
      Location:377 → 471
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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