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    LOC4326225 transcriptional corepressor LEUNIG [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326225, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326225
    Gene description
    transcriptional corepressor LEUNIG
    Locus tag
    OSNPB_010177100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4326225 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (3986381..3994828)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (3975870..3984795)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9270565 Neighboring gene BES1/BZR1 homolog protein 4 Neighboring gene ubiquitin carboxyl-terminal hydrolase 14 Neighboring gene gibberellin 3-beta-dioxygenase 2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcriptional corepressor LEUNIG
    Names
    Os01g0177100
    P0013F10.23-1
    P0013F10.23-2
    putative transcriptional corepressor LEUNIG

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      3986381..3994828
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778799.3 → XP_015634285.1  transcriptional corepressor LEUNIG

      UniProtKB/TrEMBL
      A0A0N7KCF7, A0A0P0UZG5, Q0JQ80, Q5VRV5, Q5VRV6
      Conserved Domains (4) summary
      COG2319
      Location:588 → 877
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:590 → 877
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam08513
      Location:15 → 41
      LisH; LisH
      sd00039
      Location:601 → 638
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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