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    LOC4329669 uncharacterized LOC4329669 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329669, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329669
    Gene description
    uncharacterized LOC4329669
    Locus tag
    OSNPB_020556900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1008_F08.22
    Expression
    Ubiquitous expression in mature seeds (RPKM 11.4), flowers (RPKM 5.8) and 6 other tissues See more
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    Genomic context

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    See LOC4329669 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (21543073..21547955, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (21064136..21069098, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4329667 Neighboring gene uncharacterized LOC107280142 Neighboring gene protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1 Neighboring gene tubulin-folding cofactor C Neighboring gene uncharacterized LOC136355318

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4329669
    Names
    DDT domain-containing protein DDB_G0282237
    Os02g0556900
    putative DDT domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      21543073..21547955 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767690.2 → XP_015623176.1  uncharacterized protein LOC4329669 isoform X2

      UniProtKB/TrEMBL
      B8ADX1
      Conserved Domains (4) summary
      pfam02791
      Location:285 → 340
      DDT; DDT domain
      pfam10537
      Location:23 → 118
      WAC_Acf1_DNA_bd; ATP-utilizing chromatin assembly and remodelling N-terminal
      pfam15613
      Location:496 → 521
      WHIM2; WSTF, HB1, Itc1p, MBD9 motif 2
      pfam15614
      Location:528 → 566
      WHIM3; WSTF, HB1, Itc1p, MBD9 motif 3

    2. XM_015767689.3 → XP_015623175.1  uncharacterized protein LOC4329669 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VKB8, B8ADX1, Q6ZI78
      Conserved Domains (4) summary
      pfam02791
      Location:285 → 340
      DDT; DDT domain
      pfam10537
      Location:23 → 118
      WAC_Acf1_DNA_bd; ATP-utilising chromatin assembly and remodelling N-terminal
      pfam15612
      Location:386 → 419
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
      pfam15613
      Location:497 → 564
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    Nucleotide Protein
    Heading Accession and Version

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