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    LOC4342962 uncharacterized LOC4342962 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342962, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342962
    Gene description
    uncharacterized LOC4342962
    Locus tag
    OSNPB_070295800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1272H04.7
    Expression
    Ubiquitous expression in roots before flowering (RPKM 24.4), roots after flowering (RPKM 18.7) and 6 other tissues See more
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    Genomic context

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    See LOC4342962 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (11642234..11661405, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (11551089..11570307, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene UPF0235 protein At5g63440 Neighboring gene nuclear pore complex protein NUP54 Neighboring gene uncharacterized LOC136357328 Neighboring gene uncharacterized LOC4342965

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metalloexopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4342962
    Names
    B1120F06.141
    Os07g0295800
    endoplasmic reticulum metallopeptidase 1
    peptidase family-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      11642234..11661405 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791685.3 → XP_015647171.1  uncharacterized protein LOC4342962

      UniProtKB/TrEMBL
      A0A0P0X4T3, B9FWQ7
      Conserved Domains (1) summary
      cd03875
      Location:59 → 377
      M28_Fxna_like; M28 Zn-peptidase Endoplasmic reticulum metallopeptidase 1
    Nucleotide Protein
    Heading Accession and Version

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