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    LOC4329952 uncharacterized LOC4329952 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329952, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4329952
    Gene description
    uncharacterized LOC4329952
    Locus tag
    OSNPB_020610700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1476_F05.21-1
    Expression
    Broad expression in roots after flowering (RPKM 28.3), leaves after flowering (RPKM 19.0) and 5 other tissues See more
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    Genomic context

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    See LOC4329952 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (24480807..24483547, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23998075..24000821, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein CONSTANS-LIKE 3 Neighboring gene serine/arginine-rich splicing factor RSZ23-like Neighboring gene protein TAB2 homolog, chloroplastic-like Neighboring gene inorganic phosphate transporter 1-1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in chloroplast thylakoid membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized LOC4329952
    Names
    Os02g0610700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416709.1 → NP_001403638.1  uncharacterized LOC4329952

      Status: VALIDATED

      Source sequence(s)
      AK288018, CI632735, CI667809
      UniProtKB/TrEMBL
      A0A0P0VLU4, B8AFD5, Q0DZM3, Q6K9C2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      24480807..24483547 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771797.3 → XP_015627283.1  uncharacterized LOC4329952 isoform X1

      Conserved Domains (1) summary
      cl14807
      Location:52 → 88
      ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    Nucleotide Protein
    Heading Accession and Version

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