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    LOC4325063 transcription factor LG2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325063, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4325063
    Gene description
    transcription factor LG2-like
    Locus tag
    OSNPB_010859500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    LG2; rLG2; OsLG2; OsbZIP11; OsJ_04144; P0679C12.3
    Expression
    Ubiquitous expression in roots before flowering (RPKM 14.3), flower buds (RPKM 8.6) and 6 other tissues See more
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    Genomic context

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    See LOC4325063 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37181463..37188644, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene bZIP transcription factor ABI5 homolog Neighboring gene uncharacterized protein YnbD Neighboring gene F-box/LRR-repeat protein At1g67190 Neighboring gene 60S ribosomal protein L10a

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor LG2
    Names
    LOC_Os01g64020
    Os01g0859500
    P0489B03.13
    Protein LIGULELESS 2 homolog
    Transcription factor LG2
    bZIP transcription factor 11
    putative basic leucine zipper protein
    transcription factor HBP-1b(c38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001428179.1 → NP_001415108.1  transcription factor LG2

      Status: VALIDATED

      Source sequence(s)
      AK101338, CB643022, CI270821
      UniProtKB/Swiss-Prot
      Q5N7C7
      UniProtKB/TrEMBL
      B8ACI5

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      37181463..37188644 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761444.2 → XP_015616930.1  transcription factor LG2 isoform X1

      UniProtKB/TrEMBL
      B8ACI5
      Conserved Domains (2) summary
      cd14708
      Location:229 → 281
      bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
      pfam14144
      Location:314 → 388
      DOG1; Seed dormancy control

    2. XM_015761466.2 → XP_015616952.1  transcription factor LG2 isoform X3

      UniProtKB/TrEMBL
      B8ACI5
      Conserved Domains (2) summary
      cd14708
      Location:213 → 265
      bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
      pfam14144
      Location:298 → 372
      DOG1; Seed dormancy control

    3. XM_015761450.2 → XP_015616936.1  transcription factor LG2 isoform X1

      UniProtKB/TrEMBL
      B8ACI5
      Conserved Domains (2) summary
      cd14708
      Location:229 → 281
      bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
      pfam14144
      Location:314 → 388
      DOG1; Seed dormancy control

    4. XM_015761457.2 → XP_015616943.1  transcription factor LG2 isoform X2

      Conserved Domains (2) summary
      cd14708
      Location:229 → 281
      bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
      pfam14144
      Location:309 → 383
      DOG1; Seed dormancy control

    5. XM_026022348.1 → XP_025878133.1  transcription factor LG2 isoform X5

      Conserved Domains (1) summary
      cl21462
      Location:213 → 233
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    6. XM_026022347.1 → XP_025878132.1  transcription factor LG2 isoform X4

      Conserved Domains (1) summary
      cl21462
      Location:229 → 249
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5N7C7.1 GenPept UniProtKB/Swiss-Prot:Q5N7C7

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