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    LOC4349502 glycerol-3-phosphate acyltransferase, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349502, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4349502
    Gene description
    glycerol-3-phosphate acyltransferase, chloroplastic
    Locus tag
    OSNPB_100577900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 15.1), roots after flowering (RPKM 8.2) and 6 other tissues See more
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    Genomic context

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    See LOC4349502 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (23736906..23742877)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (23044698..23050741)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene probable inactive shikimate kinase like 2, chloroplastic Neighboring gene inactive poly [ADP-ribose] polymerase RCD1 Neighboring gene TOM1-like protein 1 Neighboring gene cellulose synthase-like protein D1 Neighboring gene uncharacterized LOC4349506

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals. Hiratsuka J, et al. Mol Gen Genet, 1989 Jun. PMID 2770692
    2. The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Boeckmann B, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520024, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycerol-3-phosphate O-acyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphatidylglycerol biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast stroma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycerol-3-phosphate acyltransferase, chloroplastic
    Names
    Os10g0577900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      23736906..23742877
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066304779.1 → XP_066160876.1  glycerol-3-phosphate acyltransferase, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0XXN2, B8BIE9, B9G766, Q7XBU3, Q8W3G2

    2. XM_066304781.1 → XP_066160878.1  glycerol-3-phosphate acyltransferase, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0XXN2, B8BIE9, B9G766, Q7XBU3, Q8W3G2

    3. XM_015759522.3 → XP_015615008.1  glycerol-3-phosphate acyltransferase, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0XXN2, B8BIE9, B9G766, Q7XBU3, Q8W3G2
      Conserved Domains (1) summary
      PLN02349
      Location:4 → 414
      PLN02349; glycerol-3-phosphate acyltransferase

    4. XM_015759523.3 → XP_015615009.1  glycerol-3-phosphate acyltransferase, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0XXN2, B8BIE9, B9G766, Q7XBU3, Q8W3G2
      Conserved Domains (1) summary
      PLN02349
      Location:4 → 414
      PLN02349; glycerol-3-phosphate acyltransferase

    5. XM_066304782.1 → XP_066160879.1  glycerol-3-phosphate acyltransferase, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0XXN2, B8BIE9, B9G766, Q7XBU3, Q8W3G2

    6. XM_066304780.1 → XP_066160877.1  glycerol-3-phosphate acyltransferase, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0XXN2, B8BIE9, B9G766, Q7XBU3, Q8W3G2
    Nucleotide Protein
    Heading Accession and Version

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