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    LOC4330997 cytochrome c oxidase copper chaperone 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330997, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330997
    Gene description
    cytochrome c oxidase copper chaperone 1
    Locus tag
    OSNPB_020794600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1695_H09.3
    Expression
    Ubiquitous expression in milk grains (RPKM 9.6), leaves after flowering (RPKM 9.3) and 6 other tissues See more
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    Genomic context

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    See LOC4330997 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (34272104..34273696, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (33775993..33777625, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF3-4, chloroplastic Neighboring gene serine carboxypeptidase 24 Neighboring gene leucine aminopeptidase 2, chloroplastic-like Neighboring gene formin-like protein 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables copper chaperone activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial intermembrane space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytochrome c oxidase copper chaperone 1
    Names
    Os02g0794600
    P0700F06.35
    putative copper chaperone COX17-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      34272104..34273696 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767528.3 → XP_015623014.1  cytochrome c oxidase copper chaperone 1

      UniProtKB/TrEMBL
      B8AE41, B9F400, Q6K670
      Conserved Domains (1) summary
      pfam05051
      Location:34 → 79
      COX17; Cytochrome C oxidase copper chaperone (COX17)
    Nucleotide Protein
    Heading Accession and Version

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