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    LOC4343509 transcription factor ILR3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343509, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC4343509
    Gene description
    transcription factor ILR3
    Locus tag
    OSNPB_070543000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsMYC1; OJ1729_E01.17-1
    Expression
    Ubiquitous expression in roots after flowering (RPKM 51.0), leaves after flowering (RPKM 47.3) and 6 other tissues See more
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    Genomic context

    See LOC4343509 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (21694901..21697901, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (21466836..21469857, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357445 Neighboring gene mavicyanin Neighboring gene beta-amylase Neighboring gene uncharacterized LOC107281475 Neighboring gene beta-amylase Tri a 17

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    transcription factor ILR3
    Names
    Os07g0543000
    bHLH transcription factor
    bHLH-HALZ myc like protein
    putative bHLH protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      21694901..21697901 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792219.3XP_015647705.1  transcription factor ILR3

      UniProtKB/TrEMBL
      B8B796, Q0D5Q4, Q6Z5B8, Q7XXQ5
      Conserved Domains (2) summary
      cd11446
      Location:97172
      bHLH_AtILR3_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein IAA-leucine resistant 3 (ILR3) and similar proteins
      cl11433
      Location:155199
      DivIC; Septum formation initiator