LOC4333462 T-complex protein 1 subunit beta [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4333462
Gene description: T-complex protein 1 subunit beta
Locus tag: OSNPB_030619400
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression: Ubiquitous expression in flower buds (RPKM 38.9), flowers (RPKM 28.2) and 6 other tissues See more
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Genomic context

Location:: chromosome: 3

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	3	NC_089037.1 (24346331..24351578)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	3	NC_029258.1 (23485496..23490709)

Chromosome 3 - NC_089037.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info	PubMed
enables ATP hydrolysis activity	IEA Inferred from Electronic Annotation more info	PubMed
enables ATP-dependent protein folding chaperone	IEA Inferred from Electronic Annotation more info	PubMed
enables unfolded protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in protein folding	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of chaperonin-containing T-complex	IEA Inferred from Electronic Annotation more info	PubMed
located_in cytosol	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: T-complex protein 1 subunit beta

Names: Os03g0619400; TCP-1/cpn60 chaperonin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001417709.1 → NP_001404638.1 T-complex protein 1 subunit beta

Status: VALIDATED

Source sequence(s)

AK242135, EU847021

UniProtKB/TrEMBL

A0A0P0W0W3, A0A8J8YE53, A2XJL6, A3AKG5, Q6AV23

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089037.1 Reference ASM3414082v1 Primary Assembly

Range

24346331..24351578

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015777308.3 → XP_015632794.1 T-complex protein 1 subunit beta isoform X1

UniProtKB/TrEMBL

A0A0P0W0W3, A0A8J8YE53, A2XJL6, A3AKG5, Q6AV23

Conserved Domains (1) summary

cd03336
Location:4 → 520

TCP1_beta; TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL) ...