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    LOC4325155 putative L-cysteine desulfhydrase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325155, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4325155
    Gene description
    putative L-cysteine desulfhydrase 1
    Locus tag
    OSNPB_010290100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    L-CDes1; OsL-CDes1
    Expression
    Ubiquitous expression in flower buds (RPKM 10.0), flowers (RPKM 9.0) and 6 other tissues See more
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    Genomic context

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    See LOC4325155 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (10521634..10525973, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (10496841..10500938, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene anthocyanin 5-aromatic acyltransferase Neighboring gene phenolic glucoside malonyltransferase 2-like Neighboring gene aspartic proteinase-like Neighboring gene putative L-cysteine desulfhydrase 2 Neighboring gene uncharacterized LOC136356272 Neighboring gene ABC transporter B family member 21

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    General protein information

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    Preferred Names
    putative L-cysteine desulfhydrase 1
    Names
    Isopenicillin N epimerase -like
    LOC_Os01g18640
    P0469E05.28
    NP_001415127.1
    NP_001415128.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001428198.1 → NP_001415127.1  putative L-cysteine desulfhydrase 1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK069735, CB650020, CB650021, CI094040

    2. NM_001428199.1 → NP_001415128.1  putative L-cysteine desulfhydrase 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK069735, CB650020, CB650021, CI094040
      UniProtKB/Swiss-Prot
      A0A0P0V1J9, Q9LGZ2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      10521634..10525973 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LGZ2.1 GenPept UniProtKB/Swiss-Prot:Q9LGZ2

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