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    LOC4341470 calcium-dependent mitochondrial ATP-magnesium/phosphate carrier protein 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341470, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4341470
    Gene description
    calcium-dependent mitochondrial ATP-magnesium/phosphate carrier protein 2
    Locus tag
    OSNPB_060604500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0481H08.6
    Expression
    Ubiquitous expression in flower buds (RPKM 12.6), leaves before flowering (RPKM 10.1) and 6 other tissues See more
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    Genomic context

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    See LOC4341470 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (24787583..24794136)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (23935989..23942306)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene phospholipase D alpha 2-like Neighboring gene phospholipase D alpha 2-like Neighboring gene uncharacterized LOC4341471 Neighboring gene transfer RNA leucine (anticodon CAA)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ADP transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ATP transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium-dependent mitochondrial ATP-magnesium/phosphate carrier protein 2
    Names
    Os06g0604500
    calcium-binding mitochondrial carrier protein SCaMC-1
    putative small calcium-binding mitochondrial carrier 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      24787583..24794136
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311642.1 → XP_066167739.1  calcium-dependent mitochondrial ATP-magnesium/phosphate carrier protein 2

      UniProtKB/TrEMBL
      A0A0P0WYL3, Q69X19
    Nucleotide Protein
    Heading Accession and Version

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