U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4326931 phosphatidylinositol/phosphatidylcholine transfer protein SFH6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326931, updated on 1-Aug-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4326931
    Gene description
    phosphatidylinositol/phosphatidylcholine transfer protein SFH6
    Locus tag
    OSNPB_010701900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0421H07.5
    Expression
    Broad expression in leaves before flowering (RPKM 61.8), mature seeds (RPKM 21.2) and 5 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4326931 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (29654903..29660400, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (29066683..29072608, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 711A1 Neighboring gene probable methyltransferase TCM_000336 Neighboring gene bifunctional nuclease 1-like Neighboring gene subtilisin-like protease SBT5.4

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    phosphatidylinositol/phosphatidylcholine transfer protein SFH6
    Names
    Os01g0701900
    P0047E11.29
    putative SEC14 protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409009.1 → NP_001395938.1  phosphatidylinositol/phosphatidylcholine transfer protein SFH6

      Status: VALIDATED

      Source sequence(s)
      AK066793, AP014957, CB651811, CB659916, CF305082, CF305639, CI573425
      UniProtKB/TrEMBL
      B8A8D1, Q0JK23, Q5N8J4, Q5N9S5

    RNA

    1. NR_176813.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK066793, AP014957, CB651811, CB659916, CF305082, CF305639, CI573425

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      29654903..29660400 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066306844.1 → XP_066162941.1  phosphatidylinositol/phosphatidylcholine transfer protein SFH6 isoform X2

      UniProtKB/TrEMBL
      B8A8D1

    2. XM_066306842.1 → XP_066162939.1  phosphatidylinositol/phosphatidylcholine transfer protein SFH6 isoform X1

      UniProtKB/TrEMBL
      B8A8D1, B9EZ11

    3. XM_066306845.1 → XP_066162942.1  phosphatidylinositol/phosphatidylcholine transfer protein SFH6 isoform X3

      UniProtKB/TrEMBL
      B8A8D1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials