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    LOC4327922 70 kDa peptidyl-prolyl isomerase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327922, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4327922
    Gene description
    70 kDa peptidyl-prolyl isomerase
    Locus tag
    OSNPB_010563000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves after flowering (RPKM 287.1), roots after flowering (RPKM 215.2) and 4 other tissues See more
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    Genomic context

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    See LOC4327922 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (21984201..22011691)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (21414964..21441444)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene 70 kDa peptidyl-prolyl isomerase Neighboring gene UPF0481 protein At3g47200 Neighboring gene uncharacterized LOC107275613 Neighboring gene uncharacterized LOC9267960

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidyl-prolyl cis-trans isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chaperone-mediated protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein peptidyl-prolyl isomerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    70 kDa peptidyl-prolyl isomerase
    Names
    Os01g0563000
    P0468H06.14-1
    P0468H06.14-2
    P0468H06.14-3
    P0468H06.14-4
    P0468H06.14-5
    P0468H06.14-6
    P0496H05.39-4
    peptidylprolyl isomerase ROF1-like
    peptidylprolyl isomerase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      21984201..22011691
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762176.2 → XP_015617662.1  70 kDa peptidyl-prolyl isomerase isoform X2

      UniProtKB/TrEMBL
      A0A8U0WPK4, B9EXK8, Q657L8
      Conserved Domains (1) summary
      pfam00254
      Location:312 → 400
      FKBP_C; FKBP-type peptidyl-prolyl cis-trans isomerase

    2. XM_015762162.2 → XP_015617648.1  70 kDa peptidyl-prolyl isomerase isoform X1

      Conserved Domains (1) summary
      pfam00254
      Location:312 → 400
      FKBP_C; FKBP-type peptidyl-prolyl cis-trans isomerase

    3. XM_015762183.3 → XP_015617669.1  70 kDa peptidyl-prolyl isomerase isoform X2

      UniProtKB/TrEMBL
      A0A8U0WPK4, B9EXK8, Q657L8
      Conserved Domains (1) summary
      pfam00254
      Location:312 → 400
      FKBP_C; FKBP-type peptidyl-prolyl cis-trans isomerase

    4. XM_015762168.3 → XP_015617654.1  70 kDa peptidyl-prolyl isomerase isoform X1

      Conserved Domains (1) summary
      pfam00254
      Location:312 → 400
      FKBP_C; FKBP-type peptidyl-prolyl cis-trans isomerase

    5. XM_066311222.1 → XP_066167319.1  70 kDa peptidyl-prolyl isomerase isoform X4

    6. XM_066311219.1 → XP_066167316.1  70 kDa peptidyl-prolyl isomerase isoform X3

    RNA

    1. XR_001541548.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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