LOC4328913 probable protein phosphatase 2C member 13, mitochondrial [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4328913
Gene description: probable protein phosphatase 2C member 13, mitochondrial
Locus tag: OSNPB_020255100
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: DCW11; PP2C13; OsPP2C13
Expression: Broad expression in flower buds (RPKM 34.2), flowers (RPKM 32.0) and 6 other tissues See more
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Genomic context

Location:: chromosome: 2

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	2	NC_089036.1 (8785552..8791912)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	2	NC_029257.1 (8759984..8766220)

Chromosome 2 - NC_089036.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables cation binding	IEA Inferred from Electronic Annotation more info	PubMed
enables protein serine/threonine phosphatase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in peptidyl-threonine dephosphorylation	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: probable protein phosphatase 2C member 13, mitochondrial

Names: LOC_Os02g15594; OSJNBa0052K15.14; Protein DOWNREGULATED IN CW-CMS 11; probable protein phosphatase 2C 13; protein phosphatase 2C; putative protein phosphatase 2C

NP_001396893.1

EC 3.1.3.16

XP_025879142.1

EC 3.1.3.16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001409964.1 → NP_001396893.1 probable protein phosphatase 2C member 13, mitochondrial

Status: VALIDATED

Source sequence(s)

AK069289, CB644163, CB644164

UniProtKB/Swiss-Prot

A0A0P0VH70, Q6EN45

UniProtKB/TrEMBL

T2C8Z7

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089036.1 Reference ASM3414082v1 Primary Assembly

Range

8785552..8791912

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_026023357.2 → XP_025879142.1 probable protein phosphatase 2C member 13, mitochondrial isoform X1

UniProtKB/TrEMBL

A2X330

Conserved Domains (1) summary

cd00143
Location:1 → 234

PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...