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    LOC4341819 BTB/POZ domain-containing protein At1g04390 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341819, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341819
    Gene description
    BTB/POZ domain-containing protein At1g04390
    Locus tag
    OSNPB_060674800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4341819 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (28873574..28878025)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (28007222..28011725)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4341818 Neighboring gene chromatin modification-related protein eaf-1-like Neighboring gene endochitinase A Neighboring gene NAC domain-containing protein 21/22

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BTB/POZ domain-containing protein At1g04390
    Names
    Os06g0674800
    P0778G11.11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      28873574..28878025
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788764.3 → XP_015644250.1  BTB/POZ domain-containing protein At1g04390

      UniProtKB/TrEMBL
      B8B1F0, B9FQG9
      Conserved Domains (2) summary
      cd18186
      Location:822 → 900
      BTB_POZ_ZBTB_KLHL-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing (ZBTB) proteins, Kelch-like (KLHL) proteins, and similar proteins
      cl38908
      Location:686 → 798
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

    RNA

    1. XR_010742089.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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