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    LOC4349529 uncharacterized LOC4349529 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349529, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4349529
    Gene description
    uncharacterized LOC4349529
    Locus tag
    OSNPB_110101200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4349529 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (76870..85903)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (35581..44610)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene caffeoylshikimate esterase Neighboring gene exocyst complex component EXO70B1 Neighboring gene uncharacterized LOC136353953 Neighboring gene WUSCHEL-related homeobox 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nucleolar ribonuclease P complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4349529
    Names
    Os11g0101200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      76870..85903
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026021109.2 → XP_025876894.1  uncharacterized protein LOC4349529 isoform X1

      UniProtKB/TrEMBL
      C7J9V9
      Conserved Domains (2) summary
      pfam06203
      Location:726 → 769
      CCT; CCT motif
      cl23724
      Location:7 → 229
      PHP; Polymerase and Histidinol Phosphatase domain

    2. XM_026021108.2 → XP_025876893.1  uncharacterized protein LOC4349529 isoform X1

      UniProtKB/TrEMBL
      C7J9V9
      Conserved Domains (2) summary
      pfam06203
      Location:726 → 769
      CCT; CCT motif
      cl23724
      Location:7 → 229
      PHP; Polymerase and Histidinol Phosphatase domain

    3. XM_066305373.1 → XP_066161470.1  uncharacterized protein LOC4349529 isoform X1

    4. XM_066305372.1 → XP_066161469.1  uncharacterized protein LOC4349529 isoform X1

    5. XM_015761578.3 → XP_015617064.1  uncharacterized protein LOC4349529 isoform X1

      UniProtKB/TrEMBL
      C7J9V9
      Conserved Domains (2) summary
      pfam06203
      Location:726 → 769
      CCT; CCT motif
      cl23724
      Location:7 → 229
      PHP; Polymerase and Histidinol Phosphatase domain

    6. XM_015761576.2 → XP_015617062.1  uncharacterized protein LOC4349529 isoform X1

      UniProtKB/TrEMBL
      C7J9V9
      Conserved Domains (2) summary
      pfam06203
      Location:726 → 769
      CCT; CCT motif
      cl23724
      Location:7 → 229
      PHP; Polymerase and Histidinol Phosphatase domain

    7. XM_066305374.1 → XP_066161471.1  uncharacterized protein LOC4349529 isoform X2

    8. XM_066305375.1 → XP_066161472.1  uncharacterized protein LOC4349529 isoform X2

    9. XM_066305377.1 → XP_066161474.1  uncharacterized protein LOC4349529 isoform X3

    RNA

    1. XR_010737565.1 RNA Sequence

    2. XR_010737567.1 RNA Sequence

    3. XR_010737566.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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