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    LOC4345044 RNA polymerase sigma factor sigF, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345044, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345044
    Gene description
    RNA polymerase sigma factor sigF, chloroplastic
    Locus tag
    OSNPB_080242800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SIG6
    Expression
    Biased expression in roots after flowering (RPKM 112.5), leaves before flowering (RPKM 102.3) and 3 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (8730777..8734354)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (8677955..8681488)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene WUSCHEL-related homeobox 10-like Neighboring gene ACT domain-containing protein DS12, chloroplastic Neighboring gene uncharacterized LOC4345045 Neighboring gene uncharacterized LOC4345046

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Two novel nuclear genes, OsSIG5 and OsSIG6, encoding potential plastid sigma factors of RNA polymerase in rice: tissue-specific and light-responsive gene expression. Kubota Y, et al. Plant Cell Physiol, 2007 Jan. PMID 17148693
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA polymerase sigma factor sigF, chloroplastic
    Names
    OSJNBa0087F21.45
    OSJNBb0070J06.3
    Os08g0242800
    Sig6, plastid RNA polymerase sigma factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      8730777..8734354
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795245.3 → XP_015650731.1  RNA polymerase sigma factor sigF, chloroplastic

      UniProtKB/TrEMBL
      B8BC85, Q6Z0V2, Q84LK8
      Conserved Domains (1) summary
      TIGR02997
      Location:274 → 556
      Sig70-cyanoRpoD; RNA polymerase sigma factor, cyanobacterial RpoD-like family
    Nucleotide Protein
    Heading Accession and Version

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