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    LOC4349486 dnaJ homolog subfamily C GRV2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349486, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4349486
    Gene description
    dnaJ homolog subfamily C GRV2
    Locus tag
    OSNPB_100575200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 24.8), leaves before flowering (RPKM 20.7) and 6 other tissues See more
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    Genomic context

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    See LOC4349486 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (23553646..23568447, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (22861369..22876298, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene transcription factor MYC2-like Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene protein MKS1 Neighboring gene homeobox-leucine zipper protein ROC3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endosome organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in receptor-mediated endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of early endosome to late endosome transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dnaJ homolog subfamily C GRV2
    Names
    Os10g0575200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      23553646..23568447 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758528.3 → XP_015614014.1  dnaJ homolog subfamily C GRV2

      UniProtKB/TrEMBL
      Q108V8
      Conserved Domains (2) summary
      smart00271
      Location:1540 → 1581
      DnaJ; DnaJ molecular chaperone homology domain
      pfam14237
      Location:1174 → 1224
      DUF4339; Domain of unknown function (DUF4339)
    Nucleotide Protein
    Heading Accession and Version

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