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    LOC4341520 zinc finger A20 and AN1 domain-containing stress-associated protein 8 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341520, updated on 10-Oct-2024

    Summary

    Gene symbol
    LOC4341520
    Gene description
    zinc finger A20 and AN1 domain-containing stress-associated protein 8
    Locus tag
    OSNPB_060612800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SAP3; SAP8; OsSAP8; OsJ_021110
    Expression
    Ubiquitous expression in mature seeds (RPKM 1193.1), milk grains (RPKM 383.6) and 6 other tissues See more
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    Genomic context

    See LOC4341520 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (25354003..25356156)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (24491920..24493918)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerase I subunit 1 Neighboring gene zinc finger protein WIP2 Neighboring gene uncharacterized LOC4341521 Neighboring gene uncharacterized LOC4341522

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    zinc finger A20 and AN1 domain-containing stress-associated protein 8
    Names
    LOC_Os06g41010
    P0417G12.11
    P0429G06.28
    Stress-associated protein 3
    putative multiple stress-responsive zinc-finger protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402878.1NP_001389807.1  zinc finger A20 and AN1 domain-containing stress-associated protein 8

      Status: VALIDATED

      Source sequence(s)
      CB667722, CF279090, CF280723, CF281936
      UniProtKB/Swiss-Prot
      A2YEZ6, A3BDI8, B7E4H0, Q69WY4, Q6VAG2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      25354003..25356156
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)