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    LOC4349598 probable serine/threonine-protein kinase WNK7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349598, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4349598
    Gene description
    probable serine/threonine-protein kinase WNK7
    Locus tag
    OSNPB_110114600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    WNK7; OsWNK7; OsJ_031409
    Expression
    Broad expression in leaves after flowering (RPKM 33.7), roots after flowering (RPKM 27.3) and 6 other tissues See more
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    Genomic context

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    See LOC4349598 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (697256..703406, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (654976..661272, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene putative RING-H2 finger protein ATL61 Neighboring gene protein GRAVITROPIC IN THE LIGHT 1 Neighboring gene uncharacterized LOC4349599 Neighboring gene pentatricopeptide repeat-containing protein At4g18840 Neighboring gene uncharacterized LOC107279457

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable serine/threonine-protein kinase WNK7
    Names
    LOC_Os11g02300
    Protein kinase with no lysine 7
    NP_001410064.1
    XP_025877042.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423135.1 → NP_001410064.1  probable serine/threonine-protein kinase WNK7

      Status: VALIDATED

      Source sequence(s)
      AK071885, AK071924
      UniProtKB/Swiss-Prot
      A0A0P0XYN8, Q0IV42, Q2RBE3, Q2RBE4, Q9MB01
      UniProtKB/TrEMBL
      A0AA49QA00, A2ZAS5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      697256..703406 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026021257.2 → XP_025877042.1  probable serine/threonine-protein kinase WNK7 isoform X1

      Conserved Domains (1) summary
      cl21453
      Location:33 → 291
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2RBE3.2 GenPept UniProtKB/Swiss-Prot:Q2RBE3

    Gene LinkOut

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    Research Materials