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    LOC4326690 WRKY transcription factor 71 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326690, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4326690
    Gene description
    WRKY transcription factor 71
    Locus tag
    OSNPB_010626400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    WRKY11; WRKY16; P0688A04.3
    Expression
    Broad expression in roots before flowering (RPKM 4.2), flower buds (RPKM 1.5) and 6 other tissues See more
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    Genomic context

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    See LOC4326690 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (25588111..25590858)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (25009397..25012392)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene beta-adaptin-like protein A Neighboring gene mitochondrial import receptor subunit TOM7-1 Neighboring gene uncharacterized LOC136353676 Neighboring gene uncharacterized LOC4326691

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Yilmaz A, et al. Plant Physiol, 2009 Jan. PMID 18987217, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WRKY transcription factor 71
    Names
    DNA-binding protein WRKY2-like
    Os01g0626400
    P0006C01.25
    WRKY transcription factor 11
    probable WRKY transcription factor 71

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      25588111..25590858
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770821.3 → XP_015626307.1  WRKY transcription factor 71

      UniProtKB/TrEMBL
      A2WST6, A2ZVK9, Q7F7R3, Q7XAA2, Q9FE35
      Conserved Domains (1) summary
      smart00774
      Location:204 → 261
      WRKY; DNA binding domain
    Nucleotide Protein
    Heading Accession and Version

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