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    LOC4350865 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350865, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4350865
    Gene description
    histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3
    Locus tag
    OSNPB_110602200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4350865 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (25107343..25113084)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (23158431..23164274)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9272044 Neighboring gene uncharacterized LOC107279392 Neighboring gene uncharacterized LOC112936926 Neighboring gene HVA22-like protein c

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3
    Names
    Os11g0602200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      25107343..25113084
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066305427.1 → XP_066161524.1  histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3

      UniProtKB/TrEMBL
      Q0IRS3, Q2R1K5

    2. XM_015761477.3 → XP_015616963.1  histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3

      UniProtKB/TrEMBL
      Q0IRS3, Q2R1K5, Q9AT64
      Conserved Domains (3) summary
      smart00466
      Location:357 → 506
      SRA; SET and RING finger associated domain
      PHA03247
      Location:52 → 266
      PHA03247; large tegument protein UL36; Provisional
      cl40432
      Location:556 → 781
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily

    3. XM_015761476.3 → XP_015616962.1  histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3

      UniProtKB/TrEMBL
      Q0IRS3, Q2R1K5, Q9AT64
      Conserved Domains (3) summary
      smart00466
      Location:357 → 506
      SRA; SET and RING finger associated domain
      PHA03247
      Location:52 → 266
      PHA03247; large tegument protein UL36; Provisional
      cl40432
      Location:556 → 781
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily

    4. XM_066305428.1 → XP_066161525.1  histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3

      UniProtKB/TrEMBL
      Q0IRS3, Q2R1K5
    Nucleotide Protein
    Heading Accession and Version

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